Teaching

I like teaching and had the opportunity to participate in various teaching classes.

During my PhD thesis:

  • 2011: coordination of the course Introduction to Python during the Migale platform training days. Public: researchers in biology without programming background MIG INRA, Jouy-en-Josas.
  • 2010: contribution to the BSc module Learning C programming (biology). University of Evry, France
  • 2010: coordination of the BSc module Data structures and Algorithms c in C (mathematics/computer science). University of Evry, France
  • 2010: contribution to the BSc module Java for biocomputing. University of Evry, France

... during my stay in Germany at the University of Münster:

  • 2014 and 2015: coordination of the MSc module Biocomputing for beginner and advanced student in Python. WWU Münster, Germany.
  • 2013, 2014, 2015: contribution to the BSc module Bioinformatik II.
  • 2013: contribution to the MSc module Computational and statistical sequence analysis.

... and more recently in two lectures targeted toward employes:

  • 2021 and 2022: Introduction to Datascience and AI.
  • 2021 and 2022: Datascience.

I very much like to share my experience and passion and had the opportunity over the years to mentor several students:

  • 2022 (6 month): ESISAR 3ird year. Confidence learning on data preprocessing for training AI models.
  • 2022 (6 month): Master 2. Paris Dauphine. Graph Neural Network for anomaly detection on information network.
  • 2022 (6 month): Master 2 ENS. Active learning for anomaly detection
  • 2022 (6 month): INSA Roeuen 3ird year. Study on data limitation to train Offline Reinforcement Learning models.
  • 2021 (5 month): CentralSupelec 2nd year. Self-supervised models for anomaly detection on vessel trajectories.
  • 2018 (6 month): Master 1 UPMC. Conservation of protein dynamics properties between ancestral and modern structures.
  • 2016 (6 month): Master 2 Rennes 1. Orphan domain detection. Application to the intracellular biomineralization mechanisms in cyanobacteria.
  • 2015 (3 month): Forschungsmodul. Protein domains analyze in Mammalian orthologous proteins.
  • 2014 (2+3 month): Forschungsmodul+BSc. Protein domains and RNA-seq analyses of the Human and Oposum species.
  • 2013 (2 month): Forschungsmodul. Evolution of the Protein Domain Universe Graph (PDUG) in different lineages.