Publications
Journals
2022
- Benzerara, Karim, et al. "A New Gene Family Diagnostic for Intracellular Biomineralization of Amorphous Ca Carbonates by Cyanobacteria". Genome Biology and Evolution, 2022
2021
- Tristan Bitard-Feildel. "Navigating the amino acid sequence space between functional proteins using a deep learning framework". PeerJ. Computer Science, 2021.
- Necci, Marco, et al. "Critical assessment of protein intrinsic disorder prediction." Nature Methods, 2021.
2019
- Alexis Lamiable, Tristan Bitard-Feildel, Joseph Rebehmed, Flavien Quintus, Françoise Schoentgen, Jean-Paul Mornon, Isabelle Callebaut. A topology-based investigation of protein interaction sites using Hydrophobic Cluster Analysis. Biochimie, 2019
- Guilhem Faure, Kévin Jézéquel, Florian Roisné-Hamelin, Tristan Bitard-Feildel, Alexis Lamiable, Stéphane Marcand, and Isabelle Callebaut. Discovery and Evolution of New Domains in Yeast Heterochromatin Factor Sir4 and Its Partner Esc1. Genome biology and evolution, 2019
2018
- Tristan Bitard-Feildel, Alexis Lamiable, Jean-Paul Mornon, and Isabelle Callebaut. Order in disorder as observed by the "hydrophobic cluster analysis" of protein sequences. Proteomics, 2018
- Yasaman Karami, Tristan Bitard-Feildel, Elodie Laine, and Alessandra Carbone. "Infostery" analysis of protein dynamics identifies highly sensitive residues and predicts deleterious mutations. Scientific reports, 2018
- Steffen Klasberg°, Tristan Bitard-Feildel°, and Isabelle Callebaut, Erich Bornberg-Bauer. Origins and Structural Properties of Novel and De Novo Protein Domains During Insect Evolution. The FEBS Journal, 2018.
- Mark C. Harrison et al. Hemimetabolous genomes reveal molecular basis of termite eusociality. Nature Ecology and Evolution, 2018.
- Tristan Bitard-Feildel, and Isabelle Callebaut. HCAtk and pyHCA: A Toolkit and Python API for the Hydrophobic Cluster Analysis of Protein Sequences. bioRXiv, 2018.
2017
- Ludovic Mallet°, Tristan Bitard-Feildel°, Franck Cerutti, Helene Chiapello. PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies. Bioinformatics, 2017.
- Tristan Bitard-Feildel, and Isabelle Callebaut. Exploring the dark foldable proteome by considering hydrophobic amino acids topology. Scientific Reports, 2017.
2016
- Steffen Klasberg, Tristan Bitard-Feildel, Ludovic Mallet. Computational Identification of Novel Protein Coding Genes: Current State of the Art, Pitfalls and Future Perspectives. Bioinformatics Biology Insights, 2016.
2015
- Tristan Bitard-Feildel, Carsten Kemena, Jennifer Greenwood, Erich Bornberg-Bauer. Domain similarity based orthology detection. BMC Bioinformatic, 2015.
- Tristan Bitard-Feildel, Magdalena Heberlein, Erich Bornberg-Bauer, Isabelle Callebaut. Detection of Orphan Domains in Drosophila using "Hydrophobic Clustering Analysis". Biochimie, 2015.
- Carsten Kemena, Tristan Bitard Feildel and Erich Bornberg-Bauer. MDAT- Aligning multiple domain arrangements. BMC Bioinformatics, 2015.
°: equal contribution
Conferences
- Fred Ngolè Mboula, Tristan Bitard-Feildel, and Erwan Nogues. Intrusion Detection based on Electromagnetic Side-channel Signals Analysis. Oral presentation - CAID 2020
- Tristan Bitard-Feildel°, Tristan Charrier°, Silvia Gil Casals, and Benjamin Farcy. DECOV and Météo COVID : AI for modeling and helping the lifting of lockdown COVID-19. Oral presentation - CAID 2020
- Tristan Bitard-Feildel, and Isabelle Callebaut. Looking in the dark: disorder associated with “unannotated” protein sequences and emergence of de novo protein domains. Oral presentation - ECCB SIGs 2018
- Tristan Bitard-Feildel, and Isabelle Callebaut. Orphan domain identification in sequences without annotation. Oral presentation ANSES - DEBUG 2018.
- Tristan Bitard-Feildel, and Alessandra Carbone. Protein dynamics adaptation during evolution Oral presentation - GDR AIEM 2018
- Tristan Bitard-Feildel, and Alessandra Carbone. LSTM-RNN to analyse protein domain families. Oral presentation - JOBIM 2018
- Tristan Bitard-Feildel, Steffen Klasberg, Magdalena Heberlein, Isabelle Callebaut, and Erich Bornberg-Bauer. Detection and Evolution of orphan protein domains. Oral presentation - SMBE 2015.
- Tristan Bitard-Feildel, Antoine Vigneron, and Jean-François Gibrat. Ab initio prediction of protein structures. Poster presentation - JOBIM 2011.
- Tristan Bitard-Feildel, Antoine Vigneron, and Jean-François Gibrat. Heterogeneous coarse-grained model for protein structure predictions. Poster presentation - GGMM 2011.
- Tristan Bitard-Feildel, Antoine Vigneron, and Jean-François Gibrat. Statistical potential and coarse-grained model for protein structure predictions. Poster presentation - JOBIM 2010.
Awards and Grants
- 2020 - 3rd place on ENS' Challenge data, Dyni Odontocete Click Classification, 10 species
- 2017 - NVIDIA - GPU Grant Program
- 2015 - Society for Molecular Biology and Evolution - Young Investigator Travel Award